PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0066391
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 204aa    MW: 22611 Da    PI: 5.6311
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0066391genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122749123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            y+C+ C++ Fs+   L  H++ H
  RcHm_v2.0_Chr5g0066391 27 YECTFCKRGFSNAQALGGHMNIH 49
                            99*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    
MESGDQQTPE NSGDQQVTSQ VAAAKSYECT FCKRGFSNAQ ALGGHMNIHR KDKAKLKQVS  60
SSTNVVETKQ QQRLLLEIPK MPPTYSPILP KINQSITTLE AINMPHADHI ERSATTIRGS  120
SWPADWFLNA KEGDNQLNQV QQLPLFSQAP SDQDHQYQGG QQQQPEVQGD QSEKGSDLDL  180
ELRLGPEPED SSSTSAKATT RKFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.15e-18C2H2 family protein