PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0069751
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 158aa    MW: 17843.2 Da    PI: 9.6285
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0069751genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox53.54.1e-17767256
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHH CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakek 56
                             +R+ +t++q+++L+el+     + p+ e+ ++++ +l    +++ ++V++WFqN+Ra+ek
  RcHm_v2.0_Chr5g0069751  7 NTRWLPTTDQIRILKELYDDkgVKSPTVEQGQRITLQLkwygQIENKNVFYWFQNQRAREK 67
                            58*****************6579*************************************9 PP
2Wus_type_Homeobox95.35.3e-31670265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++tRW Pt++Qi+iL+ely+ +G+++P+ e+ qrit +L+ yG+ie+kNVfyWFQN++aRe+ k+
  RcHm_v2.0_Chr5g0069751  6 SNTRWLPTTDQIRILKELYDdKGVKSPTVEQGQRITLQLKWYGQIENKNVFYWFQNQRAREKLKK 70
                            789****************999****************************************885 PP
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    
MYCKQSNTRW LPTTDQIRIL KELYDDKGVK SPTVEQGQRI TLQLKWYGQI ENKNVFYWFQ  60
NQRAREKLKK KKLTSDVQVP KQRSGLVAGS INLNFRSTSS ADVGGSIMEQ RGEDHQEIKT  120
LLLFPMHGED IFGDMKTTSD GGGGHGGGSY ISLELSLS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.17e-28WOX family protein