PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0069901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C3H

Protein Properties

Length: 694aa MW: 75542.1 Da PI: 5.8151

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0069901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.3	4.9e-07	276	296	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ GtC+ Gd C +aHg RcHm_v2.0_Chr5g0069901 276 PCPEFRK-GTCRQGDACEYAHG 296 8****.***********8 PP

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence
MCSGSKRKPC STDSTMDHEK QEGLRFSFSI LLELAAADDL DGFKSAVEED GHDVDEVSYW 60 YGRRVGSKKM GFEERTPLMI AAMFGSMNVL NYILQTCRVD VNRACGSDRA TALHCAAAGG 120 SGAAAEVVKV LLAASADASS IDVNGNQAGD LIAPAYSSAF NSRKKALEVM LKGNSGLDEA 180 FFSEQMASEA EGEDQQEITT PRASKDGTER KEYPVDLSLP DIKNGIYSTD EFRMYTFKVK 240 PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRQGDA CEYAHGIFEC 300 WLHPAQYRTR LCKDETGCTR RVCFFAHKTE ELRPLYASTG SAVPSPRSFS AGASLDMGSL 360 SPLSLNSPSA LIPSVSTPPM TPTGASSPMN GNMWQNQPNI APPTLQLPGS RLKSTLSARD 420 MDLDMEFLSL ENHRRRQRLI DELSSPSSGW NNGLSSPSAF AASGNRIGEL NRIGGVRPTN 480 LEDAFGSIDP AMLPQLQGLS RDTTASQLQS PTGIQMRQNM NMQLRSSYSG SPASSPVRGS 540 PLHGFDASGA AAVLSSRSAA FAKQRSQSFI ERSANHNYGF SSPADSGTPQ TSNLSNWGSP 600 NGKLDWGIQG EELNKLRKSA SFGYRNNGNS VPTVDEPDVS WVNTLVKDAP GPSRPGPLGF 660 EDQQQQQCHL DNGDSEILPA WVEQMYLEQE QMVA

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence

MCSGSKRKPC STDSTMDHEK QEGLRFSFSI LLELAAADDL DGFKSAVEED GHDVDEVSYW  60
YGRRVGSKKM GFEERTPLMI AAMFGSMNVL NYILQTCRVD VNRACGSDRA TALHCAAAGG  120
SGAAAEVVKV LLAASADASS IDVNGNQAGD LIAPAYSSAF NSRKKALEVM LKGNSGLDEA  180
FFSEQMASEA EGEDQQEITT PRASKDGTER KEYPVDLSLP DIKNGIYSTD EFRMYTFKVK  240
PCSRAYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRQGDA CEYAHGIFEC  300
WLHPAQYRTR LCKDETGCTR RVCFFAHKTE ELRPLYASTG SAVPSPRSFS AGASLDMGSL  360
SPLSLNSPSA LIPSVSTPPM TPTGASSPMN GNMWQNQPNI APPTLQLPGS RLKSTLSARD  420
MDLDMEFLSL ENHRRRQRLI DELSSPSSGW NNGLSSPSAF AASGNRIGEL NRIGGVRPTN  480
LEDAFGSIDP AMLPQLQGLS RDTTASQLQS PTGIQMRQNM NMQLRSSYSG SPASSPVRGS  540
PLHGFDASGA AAVLSSRSAA FAKQRSQSFI ERSANHNYGF SSPADSGTPQ TSNLSNWGSP  600
NGKLDWGIQG EELNKLRKSA SFGYRNNGNS VPTVDEPDVS WVNTLVKDAP GPSRPGPLGF  660
EDQQQQQCHL DNGDSEILPA WVEQMYLEQE QMVA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G58620.1	0.0	C3H family protein