PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0071311

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 195aa MW: 21522.6 Da PI: 7.47

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0071311	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.5	1.3e-44	26	125	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +Ca+Ck+lrr+CakdC++apyfp+++p+kfa+vhk+FGasnv+k+l++lp ++r da+sslvyeA+ar+rdPvyG+vg i+ lq+q+ RcHm_v2.0_Chr5g0071311 26 PCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPLHQRGDAVSSLVYEANARVRDPVYGCVGAISFLQNQV 112 7************************************************************************************ PP DUF260 88 eqlkaelallkee 100 ++l+ +la++++e RcHm_v2.0_Chr5g0071311 113 SNLQMQLAVAQAE 125 ******99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence
MAGIGNPTPL CSSKLKFQGE MGGTSPCASC KLLRRRCAKD CIFAPYFPSD DPHKFAIVHK 60 VFGASNVSKM LQELPLHQRG DAVSSLVYEA NARVRDPVYG CVGAISFLQN QVSNLQMQLA 120 VAQAEILCIQ MQQEPVAATL PASQMLDHHQ YQDHDQKSLL LSNSHDFNNI PQYLSSFASS 180 SNVIQDPLKR ESLWT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	1e-81	LBD family protein