PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0072401
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family LBD
Protein Properties Length: 217aa    MW: 23399.6 Da    PI: 8.1442
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0072401genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.95.5e-41251241100
                  DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 
                             +CaaCk+lrrkCa++C++ pyf  ++p+kf +vhk+FGasnv+kll +++e++r da++slvyeA+ r+rdPvyG+vgvi++lqq++
  RcHm_v2.0_Chr5g0072401  25 PCAACKLLRRKCAEECPFFPYFSPHEPHKFSAVHKVFGASNVSKLLMEVSENQRADAANSLVYEANLRLRDPVYGCVGVISTLQQKI 111
                             7************************************************************************************** PP

                  DUF260  88 eqlkaelallkee 100
                             ++l++el+++++e
  RcHm_v2.0_Chr5g0072401 112 QSLQTELHAVRTE 124
                             ********99876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    
MVMMSRQNNS FGQLPGMTTL NTITPCAACK LLRRKCAEEC PFFPYFSPHE PHKFSAVHKV  60
FGASNVSKLL MEVSENQRAD AANSLVYEAN LRLRDPVYGC VGVISTLQQK IQSLQTELHA  120
VRTEMLRCKY KEAPSQIVSS GDHIHPHHAA AALVSSGMVS IAAPPQSILT SPPAAPPSSV  180
VFSSSSSTST STSSLYTPST NTTGFSSLSS DNLPYFD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30340.13e-69LBD family protein