PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0073531
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 266aa    MW: 30143.5 Da    PI: 5.4199
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0073531genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2612.6e-19101150255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                             +++GVr+++ +grW+AeIrdp     + kr +lg+f taeeAa  +++a+ kl+g
  RcHm_v2.0_Chr5g0073531 101 HFRGVRQRP-WGRWAAEIRDPI----QrKRLWLGTFNTAEEAAIIYDRAAVKLRG 150
                             79*******.**********83....35*************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    
MAKFSEHFIS VSKFVHENSQ TTHLESRRVL QKRVRIILTD PDATDSDSDD DESSAVRRVK  60
RHVKEINLER ASSSFKLPKR EQPETRPDPK SPKSDPARKK HFRGVRQRPW GRWAAEIRDP  120
IQRKRLWLGT FNTAEEAAII YDRAAVKLRG PDAVTNFPNA VATEETVVAE EVVVPTAHEE  180
ERSFGSTATC DSSSNVEPAS SPTSVLRYDD PAPFDGFHYC DFHACGFEYD VPLLNLPDIM  240
IPASNNFNHD EFGEFDVNDF LVDVIS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-35ERF family protein