PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0074621

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 505aa MW: 55738.5 Da PI: 6.3434

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0074621	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00062	54	74	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C+k F + L H+r+H RcHm_v2.0_Chr5g0074621 54 CHICHKGFESGKALGGHMRMH 74 ********************9 PP
2	zf-C2H2	15	7.3e-05	116	134	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 Cgk F++k +L H+r+H RcHm_v2.0_Chr5g0074621 116 ECGKIFPSKKSLYGHMRSH 134 7*****************9 PP
3	zf-C2H2	12.7	0.00039	366	388	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+ksF ++ L H+++H RcHm_v2.0_Chr5g0074621 366 YPCSLCNKSFQSHQALGGHMSSH 388 99*******************99 PP
4	zf-C2H2	13.9	0.00016	433	455	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C C+++F++ L H+r+H RcHm_v2.0_Chr5g0074621 433 HQCRFCNRTFPTGQALGGHMRSH 455 79********************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFSEQGN RKPENLAPQF TKICHICHKG 60 FESGKALGGH MRMHVQESKG LIKSSSKSPK PAVVKNSATE FSTSTTDSSG EPVCIECGKI 120 FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR 180 IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDELDL SEAVHDLMML 240 AQANPKGAEE ATNSNFMTKN EDRDGKDRTV IDYVGVAKKR KQKLEIEEDG DFVSGFDLGK 300 SRNHLELGVD LKEDSEEELS DSENSESIVL ANMMRRKKRR KMKLEDLEGA VVAQDHQHQS 360 HHHKVYPCSL CNKSFQSHQA LGGHMSSHNK FKNNIQYPVE HDHHQSGSDD TNNGNANLTN 420 AATQVDHDQA ESHQCRFCNR TFPTGQALGG HMRSHWTGPN DPAQSSQTGR KGLDIDLNEL 480 PPMEYEQGID YSGAGYGTSS YNSVT

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MDMEHQEITN PEITESNNNG GGLLIKLKMA KAEPFSEQGN RKPENLAPQF TKICHICHKG  60
FESGKALGGH MRMHVQESKG LIKSSSKSPK PAVVKNSATE FSTSTTDSSG EPVCIECGKI  120
FPSKKSLYGH MRSHPDRPYR GIEPPQSTKN SSTSTLSDAL PQNNHKAAED QQIDSAGTAR  180
IWFGPNPKVV PDLVKIVPSW SQTAKRGTKG TSLSETNSET DDDCDDELDL SEAVHDLMML  240
AQANPKGAEE ATNSNFMTKN EDRDGKDRTV IDYVGVAKKR KQKLEIEEDG DFVSGFDLGK  300
SRNHLELGVD LKEDSEEELS DSENSESIVL ANMMRRKKRR KMKLEDLEGA VVAQDHQHQS  360
HHHKVYPCSL CNKSFQSHQA LGGHMSSHNK FKNNIQYPVE HDHHQSGSDD TNNGNANLTN  420
AATQVDHDQA ESHQCRFCNR TFPTGQALGG HMRSHWTGPN DPAQSSQTGR KGLDIDLNEL  480
PPMEYEQGID YSGAGYGTSS YNSVT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	334	341	MRRKKRRK
2	335	341	RRKKRRK
3	337	341	KKRRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26940.1	7e-16	C2H2 family protein