PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0076691
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 179aa    MW: 20444.3 Da    PI: 10.5543
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0076691genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.82.4e-153091257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            r+R+ +t++ +++L+elF++  +r p+ e+++++  +l    +++ ++V++WF N+Ra+ek+
  RcHm_v2.0_Chr5g0076691 30 RTRWIPTTDHIRILKELFYNkgDRSPTIEQIQRICLQLkwygKIEFKNVYFWFLNQRAREKQ 91
                            89*****************778**************************************97 PP
2Wus_type_Homeobox83.32.8e-272993265
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +rtRW Pt++ i+iL+el++ +G r+P+ e+iqri  +L+ yGkie kNV++WF N++aRe+qk+
  RcHm_v2.0_Chr5g0076691 29 SRTRWIPTTDHIRILKELFYnKGDRSPTIEQIQRICLQLKWYGKIEFKNVYFWFLNQRAREKQKK 93
                            789**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    
MEPQNRHPTE DGGSNKAARS SANMLRRKSR TRWIPTTDHI RILKELFYNK GDRSPTIEQI  60
QRICLQLKWY GKIEFKNVYF WFLNQRAREK QKKKSTSDVH VPMQRSGLVG DDNVTNWKHE  120
DQYINFGSSA PASASSAGVM IAFNGQMGKY GGYGSMNMEK SARIVQSQLE GKLVLLSLT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.18e-25WOX family protein