PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0077101

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 299aa MW: 34025 Da PI: 8.2297

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0077101	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.7e-05	174	193	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ RcHm_v2.0_Chr5g0077101 174 FSCPLCFKTFNRYNNMQMHM 193 89*****************9 PP
2	zf-C2H2	14.8	8.1e-05	258	280	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ RcHm_v2.0_Chr5g0077101 258 FMCRKCGKAFAVRGDWRTHEKNC 280 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 299 aa Download sequence
MTDPYPSNYF NGWFNLNFSP PTPSLAYNFH HHHQAPFSNY NMINNNSNSF FSSHHQSSSS 60 PPSPPLKEAL PLLSLSPKRD HQDELAEDHD QHADDNDDDE EETVTVALHL GLPNPTSAAD 120 LISRLSSSEI SSADREDAVT TPNASSPGYV SNRLNKGQYW IPTPSQILIG PTQFSCPLCF 180 KTFNRYNNMQ MHMWGHGSQY RKGPESLRGT QPTAMLRLPC YCCAPGCRNN IDHPRSKPLK 240 DFRTLQTHYK RKHGIKPFMC RKCGKAFAVR GDWRTHEKNC GKLWYCTCGS DFKHKSLWH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-105	C2H2 family protein