PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr5g0079911

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

WOX

Protein Properties

Length: 121aa MW: 13868.7 Da PI: 10.2874

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr5g0079911	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.2	8.8e-16	10	68	5	57
SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 5 ttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +++t +q+++L+el+++ r p+ e++++ + +l +++ +++++WF N+Ra+ek+ RcHm_v2.0_Chr5g0079911 10 WAPTYDQIRILKELYYNegVRSPTVEQIQRVSLQLkqygKIESKNIFYWFENQRAREKQ 68 899**********97789***********************************97 PP
2	Wus_type_Homeobox	94.5	9.4e-31	6	70	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ++t W+Pt +Qi+iL+ely+ +G+r+P+ e+iqr++ +L++yGkie+kN+fyWF N++aRe+qk+ RcHm_v2.0_Chr5g0079911 6 SSTGWAPTYDQIRILKELYYnEGVRSPTVEQIQRVSLQLKQYGKIESKNIFYWFENQRAREKQKK 70 6788************9779***************************************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence
MLCRQSSTGW APTYDQIRIL KELYYNEGVR SPTVEQIQRV SLQLKQYGKI ESKNIFYWFE 60 NQRAREKQKK KITSDVHVPM KRSRLVGNGN GSNWKPEDQY INFGSSASAS ASSAGVMIAF 120 N

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17950.1	3e-31	WOX family protein