PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0080561
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 300aa    MW: 31686.5 Da    PI: 9.5357
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0080561genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH29.41.4e-09105130227
                             -S---SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                             kt+lC+ +     Ck+Gd+C+FaHg+
  RcHm_v2.0_Chr5g0080561 105 KTRLCNKYNTAEGCKFGDKCHFAHGE 130
                             8***********************96 PP
2zf-CCCH33.85.9e-11267291126
                             --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                             +kt+lC +f + G+C +GdrC+FaHg
  RcHm_v2.0_Chr5g0080561 267 FKTKLCENFTK-GQCTFGDRCHFAHG 291
                             69*********.*************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    
MDFGGGRKRG RHEAASFNGN GGFKKSKPEM ESFSTGIGSK SKPCTKFFST SGCPFGEGCH  60
FLHYVPGGVK AVSQMTGSNP THAPPPRHSA APPSFPDGSS PPAVKTRLCN KYNTAEGCKF  120
GDKCHFAHGE YELGRPTAQS YDDPRGGGAM HGRMGGRNEP PPPSHGGAGR FGAIANAKIS  180
VDASLAGAII GKNGLNSKQI CRVTGAKLSI REHESDPKLR NIELEGTFDQ IKDASAMVQD  240
IIVNVSSSAG PHMRNPSMGA SQGSSNFKTK LCENFTKGQC TFGDRCHFAH GAEELRRGGM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.18e-53C3H family protein