PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0083271
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 282aa    MW: 31453.1 Da    PI: 8.3155
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0083271genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.7e-193282155
                     AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                            s++ GVr+++ +g+WvAeI+d      k+ r +lg+f taeeAa+a+++a+  l+g
  RcHm_v2.0_Chr5g0083271 32 SKFVGVRQRP-SGKWVAEIKDtT----KKIRMWLGTFETAEEAARAYDEAACLLRG 82
                            79********.7*********33....36**********************99987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    
MGLQSQKHEK RVLAEKESKF KQSSSSNNKT KSKFVGVRQR PSGKWVAEIK DTTKKIRMWL  60
GTFETAEEAA RAYDEAACLL RGSNTRTNFT SSHVPSNSPL SLKIKNLLNH KKSLKQQSPS  120
TPNTIKTTPK ASTRISSTIT DNNIHSSSYY NANCSSLPSF KSQSIEVSGD AYRPDLSNCI  180
GDLQVPAMFH FDQPWQFLSG FDQLPHNHEG LYLTKGIATG VSRSAAEPNQ LTEFEHAEVE  240
RQITSASFYA MNEVNEYLEN AYDDASDALW DLPSLSQLFC LG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-45ERF family protein