PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr5g0083891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WRKY
Protein Properties Length: 140aa    MW: 15720.7 Da    PI: 4.9993
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr5g0083891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.23.4e-233693259
                            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
                            +Dgy+W+KYGqK +k+    rsY++C  ++C++kk+ e s+++p+ + ++Yeg Hnh+
  RcHm_v2.0_Chr5g0083891 36 EDGYEWKKYGQKFIKNVGKFRSYFKCQNSNCRAKKRAEWSSSEPDELRVVYEGVHNHT 93
                            7********************************************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 140 aa     Download sequence    
MSETDHHDED DQIYGEGEEV QDNTSSGGSN KLVIPEDGYE WKKYGQKFIK NVGKFRSYFK  60
CQNSNCRAKK RAEWSSSEPD ELRVVYEGVH NHTDNNASSA GSASHSQQPD SSSSLNPSTD  120
ANRYDLYTQV FGNQQGDKKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69310.22e-16WRKY family protein