PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0245901
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 216aa    MW: 24853.2 Da    PI: 9.6044
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0245901genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF65.26.9e-211562249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +ien++n qvtfskRr+g++KKA+EL++L +ae a+++fs+  k y +
  RcHm_v2.0_Chr6g0245901 15 KIENETNLQVTFSKRRTGLFKKASELCTLSGAEMAIVVFSPGKKPYSF 62
                            69**************************************98887766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MPRISRGRRK IAMRKIENET NLQVTFSKRR TGLFKKASEL CTLSGAEMAI VVFSPGKKPY  60
SFGHPNVESI IERYLSGSHQ PLNNSSTAQA ARLIEEANRN ATLSRLNEEL ALLNEMRDEE  120
LRKGEELLLR ERAGQHLHWR EKPKEELDTQ QLMWLKMEMQ ELHRRVAQET QFRQQLALFD  180
TTNNLMNEQH FTNPMAPFFA GIPSTSSQGA MNNDGN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.13e-40M-type_MADS family protein