PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0245921
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 249aa    MW: 28339.3 Da    PI: 9.6996
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0245921genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.86e-181257449
                            -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            e  sn qvtfskRr g++KKA+EL++L +ae+a+i+ s+  k y +
  RcHm_v2.0_Chr6g0245921 12 EKASNPQVTFSKRRFGVFKKASELCTLSGAEIALIVDSPAKKTYSF 57
                            7789***********************************9999887 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MGRQRIEVHK LEKASNPQVT FSKRRFGVFK KASELCTLSG AEIALIVDSP AKKTYSFGYP  60
SMEAVIDRYE NMNAPLANNG NTEQLMEAAR RRQTHYLMAE LDAINEDLHK ETLKRKVLNK  120
KEKAGQTQNW YERSVDCIND KEQLNFFKNV LRELGDMVAQ HSEMLRQKQV GLMQQNAAMV  180
QQAELMQQNT TIGAIRDLMQ PRAAAARPFY RGNSSSSNVM NPYGPMPSSS PLPPPAEPWN  240
PNLESRQFF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36590.11e-37M-type_MADS family protein