PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0247471
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 222aa    MW: 24418.9 Da    PI: 4.4899
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0247471genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox50.34.1e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+++t+ ql++L+ l++    +yp+ e+++e+  +l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr6g0247471 31 NRWAPTPPQLRILKGLYYDkgFKYPTPEQIQEICLHLkqygQIEDKNVFFWFQNLKARERQ 91
                            7****************96569*************************************97 PP
2Wus_type_Homeobox92.15.2e-303091363
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerq 63
                            ++RW+Ptp Q++iL+ ly+ +G + P+ e+iq+i  +L++yG+iedkNVf+WFQN kaRerq
  RcHm_v2.0_Chr6g0247471 30 NNRWAPTPPQLRILKGLYYdKGFKYPTPEQIQEICLHLKQYGQIEDKNVFFWFQNLKARERQ 91
                            78***************9889****************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    
MEQQTQQQIE DGGNNQAAGS SANTPIRLTN NRWAPTPPQL RILKGLYYDK GFKYPTPEQI  60
QEICLHLKQY GQIEDKNVFF WFQNLKARER QLMRPIRKVR VGGSLDLNFG STSSTDDGRS  120
IDLNFGSTGP TGDDGSIDLN FGSPVGYGVD GSIMEQRGEY HQEIETLPLF PMHGENVLGN  180
PKTTSEEGSA YGWYSGGWDD NNGGSCISLE LSLNSSGAAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-22WOX family protein