PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0247811
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 229aa    MW: 25795.2 Da    PI: 8.3374
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0247811genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.33.6e-222067249
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                            +i   +n qvtfskRr g++KKA+EL++LC++eva+++fs+ +k y +
  RcHm_v2.0_Chr6g0247811 20 KIAKRTNLQVTFSKRRSGLFKKASELCTLCGVEVAIVVFSPANKPYSF 67
                            577899*************************************98877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MMMKKTNKSS QGRQKIPIAK IAKRTNLQVT FSKRRSGLFK KASELCTLCG VEVAIVVFSP  60
ANKPYSFGHP DVDSLIDRFL ARNPNFNISL ADSCQQLGEA HKNASANELN MHLTRISNQI  120
ETERKRGESL DKLSKTSECW WENPVDELGQ DELRILEAAM EELKKNVNEQ ANRIWMESSN  180
TTSIASSFFM MNNAHHIFEN SRSSDQVGSD SINIPRAYDF GFAGNIGLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.11e-55M-type_MADS family protein