PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0247821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 221aa    MW: 24749.2 Da    PI: 9.6538
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0247821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221762449
                            -SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                  SRF-TF  4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                             n+sn qvtfskRr g++KKA+EL++LC+ae+a+i+fs+  k++ +
  RcHm_v2.0_Chr6g0247821 17 ANDSNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGRKVFSF 62
                            699************************************9999877 PP
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    
MVRKSKGRQK VEMVKMANDS NLQVTFSKRR SGLFKKASEL CTLCGAEIAI IVFSPGRKVF  60
SFGHPCVETV VDRFLTRNPP LHHQNSGTMQ LIEAHRNANV RELNAELTQV SNELEAERKR  120
GEELNRVQRA SQGNCWWESP IEKMEMSHCE QLGGSLEELK KAVAKQVDRL LIQTTTNPNS  180
YFAAGSSGHP TLIPNGGFNG VPVMPTHPHP HAWNPGYGRF F
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.16e-71M-type_MADS family protein