PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0248661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family CAMTA
Protein Properties Length: 79aa    MW: 9443.89 Da    PI: 9.691
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0248661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-131.33.5e-10327372112
                    CG-1  72 kLKvggvevlyc.yYahseenptfqrrcywlLeeelekivlv 112
                               +vg+v+vl c yY h+ en++fqrr+y +Lee+++k  + 
  RcHm_v2.0_Chr6g0248661  32 SFQVGNVNVLRCsYYDHGGENRNFQRRIYSMLEEDYKKSNFQ 73 
                             567999****996889*******************9987665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    
MIALPFFAYI KSYFVRDSFV LKLKLLTKNC TSFQVGNVNV LRCSYYDHGG ENRNFQRRIY  60
SMLEEDYKKS NFQPQLETK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64220.28e-10CAMTA family protein