PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0249551
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Whirly
Protein Properties Length: 229aa    MW: 25334.1 Da    PI: 10.1466
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0249551genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly192.66.1e-60551891137
                  Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsne 87 
                             s+yk+kaal++ +v+ptf++l+sg+++++r+G+++l++++a++erkyd ekkq falsatev++l++l++k+sce+fhdp++++sn+
  RcHm_v2.0_Chr6g0249551  55 SIYKGKAALSLSPVLPTFTKLESGSVVVERRGSVMLKFMPAIGERKYDSEKKQLFALSATEVGSLISLGPKDSCELFHDPSMQSSNA 141
                             7************************************************************************************** PP

                  Whirly  88 GkvrkalkvePlpdGsGlfvnlsvtnslvkgnesfsvPvskaefavlrsl 137
                             G+vrk+l+++P++dG  +f++l+v n+l+k+ esfsvPv+ aefav++++
  RcHm_v2.0_Chr6g0249551 142 GQVRKSLSIKPHADG--YFISLTVVNNLLKTRESFSVPVTTAEFAVMKTA 189
                             **************5..9******************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MMQLLRVFSS SSRNQLSKRA ALSLDSFTQS TSFSTARQNF SAKGRIGDQV YAPFSIYKGK  60
AALSLSPVLP TFTKLESGSV VVERRGSVML KFMPAIGERK YDSEKKQLFA LSATEVGSLI  120
SLGPKDSCEL FHDPSMQSSN AGQVRKSLSI KPHADGYFIS LTVVNNLLKT RESFSVPVTT  180
AEFAVMKTAC SFALPHIMGW DRLTNKVPRG IEVHKSEMAE PQLLDEWER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.12e-79Whirly family protein