PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0250991
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 143aa    MW: 16300.2 Da    PI: 9.4439
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0250991genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox44.52.6e-142789157
                            TT--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  1 rrkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            r++R+t+t++ +++L+elF++   r p+ e+ +++  +l    +++ ++V++WF N+R +ek+
  RcHm_v2.0_Chr6g0250991 27 RQSRWTPTTDHIRILNELFYNkgVRSPTIEQVQRICLQLkwygKIEFKNVYYWFVNQRSQEKQ 89
                            689*****************7789*************************************97 PP
2Wus_type_Homeobox83.32.9e-272891365
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            ++RWtPt++ i+iL+el++ +G+r+P+ e++qri  +L+ yGkie kNV+yWF N+++ e+qk+
  RcHm_v2.0_Chr6g0250991 28 QSRWTPTTDHIRILNELFYnKGVRSPTIEQVQRICLQLKWYGKIEFKNVYYWFVNQRSQEKQKK 91
                            79**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    
MEPQTQQPTE DGGSNKAAGS SANMLCRQSR WTPTTDHIRI LNELFYNKGV RSPTIEQVQR  60
ICLQLKWYGK IEFKNVYYWF VNQRSQEKQK KRSTSDVHVP MQRSGLVDDD KVTNWKHEDQ  120
YINFGSSAPA SASSAGVLIA FNG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.14e-25WOX family protein