PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0253441

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

LBD

Protein Properties

Length: 199aa MW: 21891.6 Da PI: 7.7245

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0253441	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	57.5	3.8e-18	2	91	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +C++C+vlr++C+++C+l++++ p++q++++ +v+k+FG++ +l++++a++e++r+ r+ +Pv+Ga+g++l+++ RcHm_v2.0_Chr6g0253441 2 SCNGCRVLRKGCSENCMLRQCIewmedPQAQAHATVFVAKFFGRAGLLSFINAVSESQRP-----------GRTINPVNGATGLLLAGN 79 6********************************************************8...........799*********** PP DUF260 85 qqleqlkaelal 96 ++++q+++e +l RcHm_v2.0_Chr6g0253441 80 WKVCQAAVEKVL 91 ****999776 PP

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence
MSCNGCRVLR KGCSENCMLR QCIEWMEDPQ AQAHATVFVA KFFGRAGLLS FINAVSESQR 60 PGRTINPVNG ATGLLLAGNW KVCQAAVEKV LSGGALEPLP EYSCRGIHHV RQQRRDERYS 120 SKYSTKKRPA PLAFDDDERP DLDLSLKASS ELHRDDHDRA ATPSSVEGSE TTMLSRSGSS 180 SADCTTNDSE GTRLLRLFV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	7e-55	LBD family protein