PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0255231
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 197aa    MW: 21987.7 Da    PI: 9.9736
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0255231genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.71.7e-173091257
                            T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            ++R+t+t++q+++L+elF++   r ++a++++++  +l    +++ r+V++WF N+Ra+ek+
  RcHm_v2.0_Chr6g0255231 30 STRWTPTTDQIRILNELFYNkvVRSLTAKQIQRICLQLkwygNIKSRNVYYWFGNHRAQEKQ 91
                            58*****************8789*************************************97 PP
2Wus_type_Homeobox81.51.1e-263093365
       Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                            +tRWtPt++Qi+iL+el++ + +r+ ++++iqri  +L+ yG+i+++NV+yWF N++a e+qk+
  RcHm_v2.0_Chr6g0255231 30 STRWTPTTDQIRILNELFYnKVVRSLTAKQIQRICLQLKWYGNIKSRNVYYWFGNHRAQEKQKK 93
                            79**************987578999*************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MEPQTQQPTK DGGSNKAAGS SANMLCRWSS TRWTPTTDQI RILNELFYNK VVRSLTAKQI  60
QRICLQLKWY GNIKSRNVYY WFGNHRAQEK QKKKITSDVH VPMQRSWLVG NGNGTNWKPE  120
DQYINFGSSA SASASSACVM IAFNRKMGNY GGYGSMNTEI ETLPLFPIHG EDMKTTSEGG  180
GGYNGGSRIS LELSLNS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-26WOX family protein