PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0255341

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB

Protein Properties

Length: 265aa MW: 29854.4 Da PI: 9.1294

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0255341	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	62.5	8.3e-20	17	62	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEd+ll ++v+++G ++W++I++ ++ gR++k+c++rw + RcHm_v2.0_Chr6g0255341 17 KGPWSPEEDDLLRKLVQRHGARNWTLISKSIP-GRSGKSCRLRWCNQ 62 79****************************.*********985 PP
2	Myb_DNA-binding	29	2.4e-09	70	93	23	47
-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqky 47 +W+tIar ++ gRt++ +k++w++ RcHm_v2.0_Chr6g0255341 70 RWATIARLLN-GRTDNAIKNHWNST 93 5*******.*********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 265 aa Download sequence
MDSESVQRQQ RELDRVKGPW SPEEDDLLRK LVQRHGARNW TLISKSIPGR SGKSCRLRWC 60 NQLSPEVEHR WATIARLLNG RTDNAIKNHW NSTLKRKYSS MAEDGVVVGG GGGSIEEHHH 120 LRPEKKSATV SVSGRGYSPT SLSGSDVSDS GVVPAVSSAQ VFRPVARAVL RTESPPSQNE 180 MIHNEPEPST LLTLSLPGRY STELATRREE RTTSLQQQQQ EAENENRTMS FGPEFMSFMQ 240 EMIRKEVRNY MDDMNGLHFG IPKLS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	5e-54	MYB family protein