PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0257181
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ERF
Protein Properties Length: 268aa    MW: 30091.5 Da    PI: 7.408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0257181genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.36.1e-21124173255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  RcHm_v2.0_Chr6g0257181 124 NYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFHTAEEAARAYDKAAIEFRG 173
                             59*******.**********82....48************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    
MQNSFNRSKL DTAGDPQQLT QNPVPPPPPR RLTQEQELAV IVSALRNVVA GTTTTMDFNS  60
LFPSYHYPAA ASSSSSPALF EASDAETCPV CKIQGCLGCN FFPPAQEENS NNKKKAPKKR  120
LKKNYRGVRQ RPWGKWAAEI RDPRRATRVW LGTFHTAEEA ARAYDKAAIE FRGPRAKLNF  180
PFPDNSLSMN QETSTPPTQP IQEPQKQQTV VTDTKQENKS KDSNEMECEF WERIGEDELF  240
QQWMMTMDYA PDHSSDSGNG SAGNAHSY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.11e-31ERF family protein