PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0258951
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 74aa    MW: 8679.04 Da    PI: 9.5611
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0258951genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox47.52.9e-152373955
                            HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHH CS
                Homeobox  9 keqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRake 55
                            k+ +e+Le+l++++++ps  +r++L k+     +++ +q+kvWFqNrR ke
  RcHm_v2.0_Chr6g0258951 23 KQVVEALESLYHECSKPSSIRRQQLIKEYpilsNIEPSQIKVWFQNRRCKE 73
                            345799******************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 74 aa     Download sequence    
MAMSCTDGKG VMDNGKYVRY KPKQVVEALE SLYHECSKPS SIRRQQLIKE YPILSNIEPS  60
QIKVWFQNRR CKEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52150.33e-37HD-ZIP family protein