PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259191
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family G2-like
Protein Properties Length: 398aa    MW: 44786.1 Da    PI: 7.5021
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259191genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like104.66e-33258313156
                 G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                             k+r++W+peLH+rFv+a++qLGGs++AtPk+i+elm+v+gLt+++vkSHLQkYRl+
  RcHm_v2.0_Chr6g0259191 258 KQRRCWSPELHRRFVNALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLH 313
                             79****************************************************97 PP
2Myb_DNA-binding45.71.5e-14260311148
                             TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHT.TTS-HHHHHHHHHHHT CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmg.kgRtlkqcksrwqkyl 48 
                             r  W++e++ ++v+a +qlGg    t+k I + m+  g+t  ++ks++qky+
  RcHm_v2.0_Chr6g0259191 260 RRCWSPELHRRFVNALQQLGGSqvaTPKQIRELMQvDGLTNDEVKSHLQKYR 311
                             568*****************99*****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    
MGSVPPELSL DFRPSFVPKT ITDFLKEVSL IGNVTERLSK LDDFVKRLEE EMRKIDAFKR  60
ELPLCMFLLN DAIQALKEDA MQCAKPNVQP VLEEFIPLKK DCDKNTGEPN NRKKEKDSRD  120
KKNWMSSVQL WNTDNYHPPT SDFPCDRKQG FEIDSKRNDT RNGIANEDPF QTCRDRNGGR  180
AFVPFKAYPA FPVTAVRKED KEDLAVHGLS LLTPGIKNPK EESASSGSRS TCGRAVSFSA  240
ANVQSHMRIS PQQPTSRKQR RCWSPELHRR FVNALQQLGG SQVATPKQIR ELMQVDGLTN  300
DEVKSHLQKY RLHTRRVPAA KSAPANQSVV VLGDLWMSQD QYDDSSKANS SQSGSPQGPL  360
QLAENGGNDE EDSDDDDDAK SESYSWKGHI HKPGKNDV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G03500.11e-61G2-like family protein