PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259241
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 260aa    MW: 29888.6 Da    PI: 10.2495
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259241genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3651.2e-2014106199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffkv +p +++   rl++p +f+++ g++  ++ tl+l+ +s  sW+vk+  +k+++ +++++GW+eF + n ++egDf+vF+++g+
  RcHm_v2.0_Chr6g0259241  14 FFKVILPRYST--ERLMIPPQFLKHLGKDLCSKATLSLNMSSQCSWNVKV--TKTKKDVYFKDGWQEFLNNNSVDEGDFLVFTYEGK 96 
                             88888665555..569*******777777778889***************..*********************************99 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             + f   + vf++
  RcHm_v2.0_Chr6g0259241  97 MHF--SIAVFDR 106
                             999..8888887 PP
2B338.52.1e-121672431494
                             T-EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  14 grlvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             +  ++p +f +eh   g    + +  +   + g++W +vkl    + ++ +++kGW  F+++n++k+g +++F+l+++   ++vv
  RcHm_v2.0_Chr6g0259241 167 CVYSIPTTFYREHlaAG----KYEFAFLKiSGGNKWyKVKL--VPSIRTAFMSKGWAAFARDNQIKVGHVCIFELVKE--NKMVV 243
                             6779*********6533....34566666155677758999..999999*************************9874..33454 PP
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    
MVRKNGVKEK RPSFFKVILP RYSTERLMIP PQFLKHLGKD LCSKATLSLN MSSQCSWNVK  60
VTKTKKDVYF KDGWQEFLNN NSVDEGDFLV FTYEGKMHFS IAVFDRSCCG RVDFPNETFK  120
ESIVAMTTKR PCGRPRKDNS DNTAKESAIS FKSKFPHYKS TIKKTYCVYS IPTTFYREHL  180
AAGKYEFAFL KISGGNKWYK VKLVPSIRTA FMSKGWAAFA RDNQIKVGHV CIFELVKENK  240
MVVHNLTFSG NDQVQAINSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.14e-20B3 family protein