PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259251
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 241aa    MW: 28430.8 Da    PI: 9.7542
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259251genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.31.2e-1726981791
                            E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                      B3 17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91
                            ++p +f+e+  ++++e  tlt + +  rsW+vk+  +++++ +++++GW++F ++n +kegDf+vF+++g++ f+
  RcHm_v2.0_Chr6g0259251 26 RIPPHFLEHGRNDQPERATLTWNMSLERSWTVKV--CRTKECVYFKDGWRNFLNDNSVKEGDFLVFTYEGEMHFS 98
                            69*****65566667778999999999*******..999999*************************99876663 PP
2B341.91.8e-131572411199
                             HHTT-EE--HHH.HTT---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3  11 lksgrlvlpkkfaeehggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                              k +  ++p  f +++ +   ++ ++ +   sg  + ++vkl    + ++ +++kGW+ F+++n++ +gD++ F+l +  e ++vv+
  RcHm_v2.0_Chr6g0259251 157 KKYCVYSIPTAFYRKYLSA--RNYEVAFLKISGgtKWYKVKL--VPSLQTAFMSKGWSVFAHDNQIVVGDVCAFELLK--ENKMVVH 237
                             5668889*********543..667899999777655568999..*******************************876..66679*9 PP

                             EE-S CS
                      B3  96 vfrk 99 
                             ++rk
  RcHm_v2.0_Chr6g0259251 238 ILRK 241
                             9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    
MCTYKLSMNY IILKLQFLFL YVFLKRIPPH FLEHGRNDQP ERATLTWNMS LERSWTVKVC  60
RTKECVYFKD GWRNFLNDNS VKEGDFLVFT YEGEMHFSIH DYENNCCKRG DFPTNNEPHE  120
ESAPAKSTKR NPGSPKKDYS AESFRSKFPH YTRSIKKKYC VYSIPTAFYR KYLSARNYEV  180
AFLKISGGTK WYKVKLVPSL QTAFMSKGWS VFAHDNQIVV GDVCAFELLK ENKMVVHILR  240
K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.11e-15B3 family protein