PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259321
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 253aa    MW: 29242 Da    PI: 7.5668
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259321genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-1519110299
                             EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                             ++ l  s   ++ +l +p +f +++  +++  e   l+++d+s  sW++++   ++++ ++l++GW+eF +++ + +g+f++ ++dg
  RcHm_v2.0_Chr6g0259321  19 CTFL--SPGISNEILKFPQNFQKHIlnELS--ELALLKIKDSSHCSWNIRV--HQTGSCIYLKEGWREFLEDHSIGDGEFLIVRYDG 99 
                             5556..77889999*******977775555..5669***************..77777799************************** PP

                             SSEE..EEEEE-S CS
                      B3  87 rsefelvvkvfrk 99 
                             r++f   +++f+k
  RcHm_v2.0_Chr6g0259321 100 RMQF--SIQIFDK 110
                             ****..9999997 PP
2B341.82e-131742521798
                             E--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  17 vlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                             v+p + ++++   +  +      ed++gr+Wev+     + +r++l++GW  F + n++k gD++ ++l++  + ++v +++r
  RcHm_v2.0_Chr6g0259321 174 VFPTEWCRKYlPANRYKFLLRNAEDLEGRTWEVNG--VPTNDRVMLSAGWAAFLQGNQVKKGDVCWLELES--KSKMVAHIIR 252
                             7788888888633333333445688999*******..99999**************************865..5556888777 PP
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    
MATRTFGNGV EEKKGPTFCT FLSPGISNEI LKFPQNFQKH ILNELSELAL LKIKDSSHCS  60
WNIRVHQTGS CIYLKEGWRE FLEDHSIGDG EFLIVRYDGR MQFSIQIFDK NHVERVNFPD  120
TETHDKNQTF ANNSELNGGE EDYQHYRARE NAKQFTSKFP TVAITIGNSS YYAVFPTEWC  180
RKYLPANRYK FLLRNAEDLE GRTWEVNGVP TNDRVMLSAG WAAFLQGNQV KKGDVCWLEL  240
ESKSKMVAHI IRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.19e-15B3 family protein