PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259331
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 257aa    MW: 29671.1 Da    PI: 9.7338
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259331genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.76.6e-1610102199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             ffk+   +  ++++ l++p kf +++  +++  e+ tl l+ +s  sW+v++  ++  + +++++GW++F k+n L + +f+vF ++
  RcHm_v2.0_Chr6g0259331  10 FFKII--KTGFNTDDLRIPPKFRRHMlnELS--ETATLELKGSSKCSWTVQV--SQIESDIYFKNGWQKFIKDNSLGDFEFLVFWYE 90 
                             67777..77889999*******866665444..667999*************..888889**************************9 PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             + + f  ++ +f+k
  RcHm_v2.0_Chr6g0259331  91 RPMHF--TIEIFDK 102
                             88999..9999987 PP
2B347.72.9e-151782551497
                             T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                      B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                              ++ +p +f +eh   +++   ++l++++g++W+vk+    +++++ l++GW eF +an+++ gD+++F l+g  ++++vv+v+
  RcHm_v2.0_Chr6g0259331 178 YNVAVPVDFSREHL--PQGYYNIVLKNLKGQKWKVKV--VCSGKTVKLSAGWVEFRRANQINCGDICTFDLVG--RRTMVVHVI 255
                             45789********4..235678***************..77777799***********************998..455688886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MEGASKEPTF FKIIKTGFNT DDLRIPPKFR RHMLNELSET ATLELKGSSK CSWTVQVSQI  60
ESDIYFKNGW QKFIKDNSLG DFEFLVFWYE RPMHFTIEIF DKTACKRNNL LEKSTRADNT  120
KRPRGRPRKC NRSAAGENIQ SCQSFELKEI KEEEEEEAAT LPSSGFRSFT SIMGKRCYNV  180
AVPVDFSREH LPQGYYNIVL KNLKGQKWKV KVVCSGKTVK LSAGWVEFRR ANQINCGDIC  240
TFDLVGRRTM VVHVIPK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121129KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24645.12e-16B3 family protein