PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259791
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 375aa    MW: 43623 Da    PI: 10.5841
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259791genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B351.91.4e-1616109199
                             EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkl 84 
                             ffkv +p +++++  l++p +f+++h   +++  +  tl+l+ +   sW+v++  rk++g ++l++GW+eF ++  L +++f+vF +
  RcHm_v2.0_Chr6g0259791  16 FFKVILPGYSTEH--LRFPPRFLRKHivnKLS--KRATLKLKRSPEWSWKVEV--RKSGGDVYLKDGWQEFLRDACLGDKEFLVFIY 96 
                             7888866666665..9**********975555..4558999999999999999..******************************** PP

                             -SSSEE..EEEEE-S CS
                      B3  85 dgrsefelvvkvfrk 99 
                             +g+++f   +kv++k
  RcHm_v2.0_Chr6g0259791  97 NGKMRF--SIKVYDK 109
                             999999..7777776 PP
2B341.72.1e-132923731297
                             HTT-EE--HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                      B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                             +++++++pk+f  e+  +g   +   + l++++g +W +vkl  +++ +++++tkGW  F+ an++k+g  + F++ +  e + vv+
  RcHm_v2.0_Chr6g0259791 292 RLSQVYMPKPFYGENlsSG---NYEVIYLKNSEGTKWyKVKL--SRYHNTVFMTKGWGAFAVANQVKVGSLCQFQFLK--ENRIVVH 371
                             567899******9996533...3457********99867999..*******************************766..4556888 PP

                             EE CS
                      B3  96 vf 97 
                             ++
  RcHm_v2.0_Chr6g0259791 372 IL 373
                             76 PP
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    
MVKISRNGVE EKKPSFFKVI LPGYSTEHLR FPPRFLRKHI VNKLSKRATL KLKRSPEWSW  60
KVEVRKSGGD VYLKDGWQEF LRDACLGDKE FLVFIYNGKM RFSIKVYDKN GCERMDFPDI  120
NTHQHTTSSR STKRPVRRPR KSSTGNSADK LKEVKEEEVD CNNTTDKCAS KSTETLRGRP  180
TKTTEEYTKR RLGRPTKPTS KSTKRPPVRA TKKTTESTKR PPVTPAKTTF ESTKRPRGRP  240
RKYPVTCKDS GKHIPNSEFD VLREVKEEEE DYQESGELFK SKLQYFTCKI NRLSQVYMPK  300
PFYGENLSSG NYEVIYLKNS EGTKWYKVKL SRYHNTVFMT KGWGAFAVAN QVKVGSLCQF  360
QFLKENRIVV HILNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1234242KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.17e-15B3 family protein