PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259881
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 301aa    MW: 34690.5 Da    PI: 9.9171
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259881genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.24.7e-2115107199
                             EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                             ffkv +p +++++  l++p +f+e + ++   + tl  ++ s rsW+v++  rk++g++++++GW++F k+n +++gDf+vF+++g+
  RcHm_v2.0_Chr6g0259881  15 FFKVIIPGYSTQH--LRIPPPFLEFIRNDLSDEATLNSNTCSERSWNVRV--RKTKGGVYFKDGWQGFLKDNSVEDGDFLVFEYEGN 97 
                             8899977776665..9*******99966644555666667888*******..**********************************9 PP

                             SEE..EEEEE-S CS
                      B3  88 sefelvvkvfrk 99 
                             + f   v++f++
  RcHm_v2.0_Chr6g0259881  98 MHF--SVQIFDN 107
                             999..9**9997 PP
2B344.82.2e-142223001698
                             EE--HHH.HTT..---..--SEEEEEE.TTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                      B3  16 lvlpkkfaeeh..ggkkeesktltled.esgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                              ++p +f +eh  gg+     ++++     g++W +vkl   ++ ++ +l+kGW+eF+ an++k+g ++vF+++  +e +lvv+v++
  RcHm_v2.0_Chr6g0259881 222 YSFPTSFYREHlsGGN----YEVVFLKiAGGKRWyQVKL--VRSLRTAYLSKGWSEFACANQIKVGNICVFEVV--EENKLVVHVVQ 300
                             579********76544....4566666366788846888..999999*************************65..56667999875 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MVRPKNGIKE KRPSFFKVII PGYSTQHLRI PPPFLEFIRN DLSDEATLNS NTCSERSWNV  60
RVRKTKGGVY FKDGWQGFLK DNSVEDGDFL VFEYEGNMHF SVQIFDNSCC ERDSFPDIET  120
HTKSTFAECK KRHPGRQRKS DIGCSKRPLA LNSRKDNSDN IAKKRLPGRP RKSHIRRYKR  180
PCPSNSGEDN SVPDDIVEES AKSFKSNYPH VKKAIKETFC VYSFPTSFYR EHLSGGNYEV  240
VFLKIAGGKR WYQVKLVRSL RTAYLSKGWS EFACANQIKV GNICVFEVVE ENKLVVHVVQ  300
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1176216RRYKRPCPSNSGEDNSVPDDIVEESAKSFKSNYPHVKKAIK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.16e-18B3 family protein