PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0259931
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 257aa    MW: 29695.2 Da    PI: 6.3734
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0259931genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.84e-1819111199
                             EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                             ffk+   ++ +++  l++p kf ++   +++     tl l+d+s+ sW+v +  +++ g++++++GW++Fv++n L   +f+vF+++
  RcHm_v2.0_Chr6g0259931  19 FFKII--KSGFNTEDLRIPPKFRRHLlnELS--DRATLNLMDSSNSSWTVDV--SQTEGEIYFKNGWQKFVRDNSLGNFEFLVFRYE 99 
                             67777..67777788*******855576544..5569***************..********************************9 PP

                             SSSEE..EEEEE-S CS
                      B3  86 grsefelvvkvfrk 99 
                             ++++f   + +f++
  RcHm_v2.0_Chr6g0259931 100 SDMQF--SIEIFDR 111
                             99999..9999987 PP
2B344.13.8e-141702531295
                             HT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                      B3  12 ks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                             ++  +l +p +f  ++   + +  t++l++++ r+Wev +     + + +++ l++GW  F ++n++++gD+++F+l++  +++++v
  RcHm_v2.0_Chr6g0259931 170 QNfYNLAVPTDFSVKYF--PLGYYTIVLKNSEAREWEVSVVPngkDASCNTVKLSAGWAAFRRDNQINSGDTCTFELVE--SKTMLV 252
                             44445889999998994..335669***************66554555555*************************976..455666 PP

                             E CS
                      B3  95 k 95 
                             +
  RcHm_v2.0_Chr6g0259931 253 H 253
                             6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    
MARTTFNNGG MEEKKGPTFF KIIKSGFNTE DLRIPPKFRR HLLNELSDRA TLNLMDSSNS  60
SWTVDVSQTE GEIYFKNGWQ KFVRDNSLGN FEFLVFRYES DMQFSIEIFD RNASKRITFP  120
DVRTHRRGIH TQSCQSNKLK EVKEEEEDYQ DNKEEEAATL HKTFTSIVGQ NFYNLAVPTD  180
FSVKYFPLGY YTIVLKNSEA REWEVSVVPN GKDASCNTVK LSAGWAAFRR DNQINSGDTC  240
TFELVESKTM LVHIDPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.19e-17B3 family protein