PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0260891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 212aa    MW: 23712.1 Da    PI: 4.4044
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0260891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.22.1e-163191357
                            --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                            +R+t+t++ql++L+el++    ++p+ e+++e+   l    ++++++V++WFqN +a+e++
  RcHm_v2.0_Chr6g0260891 31 NRWTPTPDQLRILQELYYDkvLKNPTPEQIQEICLYLqqygQIEDKNVFFWFQNLKARERQ 91
                            7****************96679*************************************97 PP
2Wus_type_Homeobox96.62.1e-312992264
       Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                            +++RWtPtp+Q++iL+ely+ + l++P+ e+iq+i   L++yG+iedkNVf+WFQN kaRerqk
  RcHm_v2.0_Chr6g0260891 29 TNNRWTPTPDQLRILQELYYdKVLKNPTPEQIQEICLYLQQYGQIEDKNVFFWFQNLKARERQK 92
                            679***************987899***************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MELQAQQPTE EGGSTQAAGS SANTPIRPTN NRWTPTPDQL RILQELYYDK VLKNPTPEQI  60
QEICLYLQQY GQIEDKNVFF WFQNLKARER QKLREFRNVR VGGSLDLNFG STSSTDDGRS  120
IDLKFGSTGS TSTDRSIDLN FGSRVGYDVD GSIMEQRGEY HQEIETLPLF PMHGEDIFGN  180
MKTTSEGGSD YGGGSRISLE LSLNSYGDAD MA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-25WOX family protein