PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0263141

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bZIP

Protein Properties

Length: 342aa MW: 38022.1 Da PI: 4.9333

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0263141	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	50	6.4e-16	199	259	3	63
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 +++re+rkq+NRe+A+rsR R+++e+e+L+e ++ L +e ++L +el +l++e+ kl+ e+ RcHm_v2.0_Chr6g0263141 199 RRRREKRKQSNRESAKRSRFRRQQECEKLRETAAMLNGEISELPNELRRLSEECGKLDEEN 259 579*******************************************************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MYNKLQLYPA KNRNLLSLLP LLLFLLFGAT NTLTGLQICY TMETRETSAA STQGVALEIQ 60 DKEERVLNEK DLEPMTPMTT TKEGSVDIEL VGNRVADSEK DTSFSGNSGD GVSQGAAGRG 120 EDSSDENADT NRDFSAIQKQ IFNQMGAVQN NSRVLYSATD TNLKLLNIEV NMPETHPNSG 180 LDLNVSSAHA IRTEEDHDRR RREKRKQSNR ESAKRSRFRR QQECEKLRET AAMLNGEISE 240 LPNELRRLSE ECGKLDEENS SLIDEMEKMY GPDAVADLRA VKVNSSDDGS NSIESKTPSR 300 DNSTSPTPSH RKETSPTPPE PRLFGVSLRP NLADCLHSSK VQ

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MYNKLQLYPA KNRNLLSLLP LLLFLLFGAT NTLTGLQICY TMETRETSAA STQGVALEIQ  60
DKEERVLNEK DLEPMTPMTT TKEGSVDIEL VGNRVADSEK DTSFSGNSGD GVSQGAAGRG  120
EDSSDENADT NRDFSAIQKQ IFNQMGAVQN NSRVLYSATD TNLKLLNIEV NMPETHPNSG  180
LDLNVSSAHA IRTEEDHDRR RREKRKQSNR ESAKRSRFRR QQECEKLRET AAMLNGEISE  240
LPNELRRLSE ECGKLDEENS SLIDEMEKMY GPDAVADLRA VKVNSSDDGS NSIESKTPSR  300
DNSTSPTPSH RKETSPTPPE PRLFGVSLRP NLADCLHSSK VQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	203	DRRRRE
2	199	204	RRRREK
3	199	207	RRRREKRKQ
4	200	206	RRREKRK
5	200	208	RRRREKRKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.2	3e-17	bZIP family protein