PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0264661
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 93aa    MW: 10660.9 Da    PI: 7.5136
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0264661genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.9e-091458344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                             WT+   +l+ +a +++ ++   +W  +a+ +g ++t++++k ++
  RcHm_v2.0_Chr6g0264661 14 CWTPKQNKLFERALALYDKDtpeRWQNVAKAVGGNKTAEEVKRHY 58
                            6*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 93 aa     Download sequence    
MASSSLKKHD SNSCWTPKQN KLFERALALY DKDTPERWQN VAKAVGGNKT AEEVKRHYDI  60
LLEDLRQIES GRVPLPNYKS LVTTATNVDE EER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.15e-38MYB_related family protein