PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0266821
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 101aa    MW: 11686 Da    PI: 6.5224
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0266821genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM54.54e-17496288
                     NAM  2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikev.diykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyW 83
                            p GfrFhP deelv ++L+++++  + ++ +e +++  + y   ePw    k   +   + + ++fF+kr+k +++gkr  r++ sg+W
  RcHm_v2.0_Chr6g0266821  4 PIGFRFHPIDEELVGYFLQQRARMGNqFHSNE-VSDYsEFYGQeEPWVVWdKnggSSVDDGEPLFFFTKRKKLNPNGKRFDRKVGSGTW 91
                            89*******************98776355544.555547775549****633343222245577************************* PP

                     NAM 84 katgk 88
                            + + +
  RcHm_v2.0_Chr6g0266821 92 SGQFS 96
                            97655 PP
Sequence ? help Back to Top
Protein Sequence    Length: 101 aa     Download sequence    
MGCPIGFRFH PIDEELVGYF LQQRARMGNQ FHSNEVSDYS EFYGQEEPWV VWDKNGGSSV  60
DDGEPLFFFT KRKKLNPNGK RFDRKVGSGT WSGQFSREVV V
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54330.14e-11NAC family protein