PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0266901

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

SRS

Protein Properties

Length: 197aa MW: 22364.2 Da PI: 8.1826

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0266901	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	165.2	3.6e-51	4	153	5	153
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstkl 91 +++C+dCGn+akk+C+++RCRtCCk++gf C+thvkstWvp kr+ ++q++ ++ + ++ a + + + +k+ +++ + RcHm_v2.0_Chr6g0266901 4 RSRCEDCGNKAKKECVYMRCRTCCKNKGFRCQTHVKSTWVPLCKRSLLHEQQHPNDDHHRQ-QQLAIDQGHIFINPDKKLRQHNPSS 89 569****************************************9876666655444433.3333333333334444444444444 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGle 153 s a + + +++P+ev ++a f+ +rvss+dd + ++ aYqt+v igGhvf+GiL+dqG++ RcHm_v2.0_Chr6g0266901 90 SCAGLDRDHQEANFPAEVTTMAKFQGIRVSSMDDmvDLDQHAYQTSVIIGGHVFRGILHDQGPA 153 5555556667788*****************766689********************96 PP

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence
MGSRSRCEDC GNKAKKECVY MRCRTCCKNK GFRCQTHVKS TWVPLCKRSL LHEQQHPNDD 60 HHRQQQLAID QGHIFINPDK KLRQHNPSSS CAGLDRDHQE ANFPAEVTTM AKFQGIRVSS 120 MDDMVDLDQH AYQTSVIIGG HVFRGILHDQ GPAVHQMNYY TSASAADQPH HPPSYQLINP 180 FNAFMPAGTQ FFQNLSS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-42	SRS family protein