PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0267001
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family DBB
Protein Properties Length: 216aa    MW: 24388.3 Da    PI: 6.4018
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0267001genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.11.8e-08343438
                zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                             +C+ +++ e++ fC  ++  lC+ C    H+       H+
  RcHm_v2.0_Chr6g0267001  3 IRCDVCDKAEATVFCSADEAALCDVCDRRVHHAnklaskHK 43
                            58**************************9964436666665 PP
2zf-B_box22.42.6e-075592338
                zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg..Ht 38
                             + C+ ++e +  +fC++++  lC++C  ++H+   Ht
  RcHm_v2.0_Chr6g0267001 55 SPHCDICQERRGFFFCQEDRAILCRECDHSIHNAneHT 92
                            689*******9*********************768876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    
MKIRCDVCDK AEATVFCSAD EAALCDVCDR RVHHANKLAS KHKRFFLLQP TCKDSPHCDI  60
CQERRGFFFC QEDRAILCRE CDHSIHNANE HTKKHNRFLL AGVKLSADST LYPTSSSSCS  120
TFSDDIVIIN SSDHARVASK SSTKRPRTRC NEQKLSSSSY KVEENCSIND NGSVISTNSI  180
SEYLMGDQIT EWRVEDLLDV SFEFDCFCEV GSAPYM
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75540.12e-59DBB family protein