PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0267451
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GATA
Protein Properties Length: 339aa    MW: 37379.9 Da    PI: 4.9123
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0267451genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.49.4e-19258291134
                    GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                             Cs+C++ kTp+WR gp g+ktLCnaCG++y++ +
  RcHm_v2.0_Chr6g0267451 258 CSHCQVQKTPQWRTGPLGPKTLCNACGVRYKSGR 291
                             *******************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    
MELCMEARAL KSSLLTELAL KSTQHALMEE FWGATAISGV PSEDFSVDDL LDFSNGEFED  60
GSVEEEQELE EQEEEEEDKD SVSMDSVENS NSSNFTESTL ASHLAVPDDD LAELEWVSHF  120
VDDSVSELSL LDPVIKQKPE ALKENRSEPE ARRLAQSRLS WLPSQVPVKA RSKRCRPAGR  180
SRSLWNPLGD SPSLTPCLSS PSSSSCSSGF SLSTPCLIFT SPVHNMGLFS GEPAAKKQKR  240
KPAVQTGDEV IVGIQRKCSH CQVQKTPQWR TGPLGPKTLC NACGVRYKSG RLFPEYRPAC  300
SPTFSGDVHS NSHRKVLEMR KRKDTGEPEP GMSKMIPGF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66320.24e-55GATA family protein