PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0267971
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 151aa    MW: 17879 Da    PI: 10.0234
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0267971genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131150342
                            --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                  SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                            i n   r  tf kR +g+lKK +E+  LCd+++a +i+s+
  RcHm_v2.0_Chr6g0267971 11 IANACSRRNTFKKRNKGLLKKVYEITALCDIKAAAVIYSP 50
                            889999********************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    
MARRKLRLQY IANACSRRNT FKKRNKGLLK KVYEITALCD IKAAAVIYSP FEVESKVFPS  60
HPEVHQMLTR FQDMPEMDKT RNMVNQETFL RQQIDKIQEK IIKLKRDNQE KQITQVMFDC  120
LKGKTLSDLE LKDLSDLTFI IEQNLKELDI K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-29M-type_MADS family protein