PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0268091
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 150aa    MW: 17170.5 Da    PI: 9.1274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0268091genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.8e-114692455
                            HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            +h e+Er+ R+++N++f +Lr ++P+ +      K++Ka+ L  A+ Y+++Lq
  RcHm_v2.0_Chr6g0268091 46 NHVEAERQSREKLNQWFYTLRAVVPNiS------KMDKASLLGDAITYLNDLQ 92
                            799***********************66......******************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    
MSGNFSSTAG VSSSERPKDK SLAQIDERKP RKRGRKPANG REEPLNHVEA ERQSREKLNQ  60
WFYTLRAVVP NISKMDKASL LGDAITYLND LQMKIRVMET EKQMGNSSQM QFPVPEIDFQ  120
ERHEDAVVRM NCPLDSHPVS DVIRTLKETL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12836RKPRKRGRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.13e-62bHLH family protein