PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0270891
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family bHLH
Protein Properties Length: 243aa    MW: 27366.8 Da    PI: 7.0887
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0270891genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH46.94.8e-1568119155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++ +hn+ Er RR++iN+ ++ Lr+l+P +   ++kKls  +++ ++ +YI +Lq
  RcHm_v2.0_Chr6g0270891  68 KKLNHNASERDRRKKINNLYSSLRSLVPAD---HAKKLSIPATVSRVLKYIPELQ 119
                             6789**************************...9******************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MLALSPPLFS TIGWPLEDHP ISHDHNYFSA ESSLLHFPTT LQPQFDKLDH STPSTAISGE  60
GNSSSMTKKL NHNASERDRR KKINNLYSSL RSLVPADHAK KLSIPATVSR VLKYIPELQQ  120
QVDGLIQKRD ELLSKISKQE NVILQEEKQV KSTARRSRSS LSAVSTTRLS DSEVAIQIST  180
LDSTHNFISR ILQSLEEDGL EILNASSFES SGGRVFYNLH LQVDMFHRLE CENLSEKLMS  240
FYA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.19e-57bHLH family protein