PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RcHm_v2.0_Chr6g0270981
Organism
Rosa chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C2H2
Protein Properties Length: 265aa    MW: 30055.3 Da    PI: 8.3789
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RcHm_v2.0_Chr6g0270981genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000273153123
                            EEETTTTEEESSHHHHHHHHHHT CS
                 zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                            ++C+ Cgk+F +   L  H r H
  RcHm_v2.0_Chr6g0270981 31 HVCKVCGKRFETGNGLGGHKRIH 53
                            79**********99999999988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 265 aa     Download sequence    
MKSFQEIEND FHEDQDDRSR RHHKLQNSRD HVCKVCGKRF ETGNGLGGHK RIHNLLLPNK  60
KINKFKANEK VHHPSSRDYL KDVRWLQALS VSPSQSSSSS TSSSWCESSS SDLTESDSDL  120
EKSLPIWGRK DVRGRSSTCT SSTTTLIANQ TVTNKPREAA KIKTDETSWS DKNMKPKKMM  180
MRSNLEKSRK HVCEICYKEF PTGQALGGHK SSHYYYPGST ASATSIREVP GLDQVVSNED  240
EEASRPTISR ETFEFDLNEI PSEEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56200.16e-09C2H2 family protein