PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0271921

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 427aa MW: 48270.8 Da PI: 4.3128

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0271921	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	58.2	2.9e-18	9	128	2	111
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykv.ePwdLpk..kvka.....eekewyfFskrdkkyatgkrknratk 79 pG rF P ++elv +yLk+ ++g++++ ++ + ++d+y + ePw++ + k+k +k++yfF++++k ++t+k+ r + RcHm_v2.0_Chr6g0271921 9 LPGQRFCPMEDELVLFYLKPMLSGQNVPSRNCvVFDCDLYGHqEPWEIWEafKTKRphdlrLNKDIYFFTQHKKMSSTDKHVCRNVG 95 59**********************988777699998879*742422224333334588***************** PP NAM 80 sgyWkatgkdkevlsk.kgelvglkktLvfykg 111 sg+Wk + k+v s +g++vglkk ++ + RcHm_v2.0_Chr6g0271921 96 SGTWKGDDSGKPVRSVeTGRVVGLKKRYTYKND 128 *9999999998768899***9999754 PP

Sequence ? help Back to Top
Protein Sequence Length: 427 aa Download sequence
MEESRGNQLP GQRFCPMEDE LVLFYLKPML SGQNVPSRNC VVFDCDLYGH QEPWEIWEAF 60 KTKRPHDLRL NKDIYFFTQH KKMSSTDKHV CRNVGSGTWK GDDSGKPVRS VETGRVVGLK 120 KRYTYKNDDS VHNGCSILYE FYLDQSLKDK KQKLKDYVLC LLRKNGEPKT KIEKKRKQRE 180 EEEVLENNYA FDDGEKSKRE QEELLEPQAK RQRTVPSIGN APLTMPSEDD AAFAAELEES 240 LECFEDDNAP SEARAIGFQG GENGGLQQLV AEVQSGPSFV DDNGIFNPLP KEDFLLAEML 300 EEMGMVDMEE LVLINGKSIN IDVAAEENVE NSTLLSAPTS SMSAAYDGCN DMPYLSSENG 360 CIDRSGSNNV CGGSIGFQDG AYWVESLVEV PSTVEQQKIA DEDCSDWLES IHFSPEENNF 420 LFSEMQW

Sequence ? help Back to Top

Protein Sequence Length: 427 aa Download sequence

MEESRGNQLP GQRFCPMEDE LVLFYLKPML SGQNVPSRNC VVFDCDLYGH QEPWEIWEAF  60
KTKRPHDLRL NKDIYFFTQH KKMSSTDKHV CRNVGSGTWK GDDSGKPVRS VETGRVVGLK  120
KRYTYKNDDS VHNGCSILYE FYLDQSLKDK KQKLKDYVLC LLRKNGEPKT KIEKKRKQRE  180
EEEVLENNYA FDDGEKSKRE QEELLEPQAK RQRTVPSIGN APLTMPSEDD AAFAAELEES  240
LECFEDDNAP SEARAIGFQG GENGGLQQLV AEVQSGPSFV DDNGIFNPLP KEDFLLAEML  300
EEMGMVDMEE LVLINGKSIN IDVAAEENVE NSTLLSAPTS SMSAAYDGCN DMPYLSSENG  360
CIDRSGSNNV CGGSIGFQDG AYWVESLVEV PSTVEQQKIA DEDCSDWLES IHFSPEENNF  420
LFSEMQW

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	177	PKTKIEKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24430.2	3e-10	NAC family protein