PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0272161

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 490aa MW: 55006.5 Da PI: 6.342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0272161	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21	8.7e-07	237	258	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H RcHm_v2.0_Chr6g0272161 237 FCAICGKGFKRDANLRMHMRGH 258 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 490 aa Download sequence
MDHKDKVCAD PWAKDLRNKA CSDRLPFANF GSHQHQNKWE DPSILDYGMR IEPSFQKLSQ 60 PSEDQTSLPC NSNNEKTIAD GEDVQMNDIL HASKIQDWDP RTMLTNLSFL EQKIHQLQDL 120 VHLIVGRRGQ VQGRPDELVA QQQQLITADL TSIIAQLIST AGTEAPVKLQ INSGSKLSEQ 180 PNQTDLITNY GTEQSYNIEE HESKDEEDAD DGENLPPGTY EILQLEKEEI LAPHTHFCAI 240 CGKGFKRDAN LRMHMRGHGD EYKTPAALAK PNKESSSEPT LIKRYSCPYA GCKRNKDHKK 300 FQPLKTILCV KNHYKRTHCD KSYTCSRCNT KKFSVIADLK THEKHCGKDK WLCSCGTTFS 360 RKDKLFGHIA LFQGHTPAIP MDETKTTVGP SEHGEGSEAP NRVGSINFNF GSIVPSGSGL 420 VQNIMDVKES VDDPTSYFSP LNFDTCNFDG FHEFPRPPFE DSESSFSFLM PGSCNYTQKT 480 GGESNSKKVE

Sequence ? help Back to Top

Protein Sequence Length: 490 aa Download sequence

MDHKDKVCAD PWAKDLRNKA CSDRLPFANF GSHQHQNKWE DPSILDYGMR IEPSFQKLSQ  60
PSEDQTSLPC NSNNEKTIAD GEDVQMNDIL HASKIQDWDP RTMLTNLSFL EQKIHQLQDL  120
VHLIVGRRGQ VQGRPDELVA QQQQLITADL TSIIAQLIST AGTEAPVKLQ INSGSKLSEQ  180
PNQTDLITNY GTEQSYNIEE HESKDEEDAD DGENLPPGTY EILQLEKEEI LAPHTHFCAI  240
CGKGFKRDAN LRMHMRGHGD EYKTPAALAK PNKESSSEPT LIKRYSCPYA GCKRNKDHKK  300
FQPLKTILCV KNHYKRTHCD KSYTCSRCNT KKFSVIADLK THEKHCGKDK WLCSCGTTFS  360
RKDKLFGHIA LFQGHTPAIP MDETKTTVGP SEHGEGSEAP NRVGSINFNF GSIVPSGSGL  420
VQNIMDVKES VDDPTSYFSP LNFDTCNFDG FHEFPRPPFE DSESSFSFLM PGSCNYTQKT  480
GGESNSKKVE

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	0.0	C2H2 family protein