PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0273431

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 596aa MW: 67314.6 Da PI: 4.6555

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0273431	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	165.1	2.4e-51	18	144	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 +pGfrFhPtdeelv +yLk+k+ +k+l+l +vi+e+d+yk++P++Lp + +k+++++w+fFs+rd++y++g r+nrat++gyWkat RcHm_v2.0_Chr6g0273431 18 QPGFRFHPTDEELVLYYLKRKICKKRLKL-NVIAETDVYKWDPEELPglSLLKTGDRQWFFFSPRDRRYPNGGRSNRATRHGYWKAT 103 69*************************.99***********644788899*************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 gkd+++ + ++ vglkktLvfykgrap+ge+tdWvmhey+l RcHm_v2.0_Chr6g0273431 104 GKDRNISC-YNRSVGLKKTLVFYKGRAPTGERTDWVMHEYTL 144 ****.8899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 596 aa Download sequence
MVSGDDLASA FCDGHFWQPG FRFHPTDEEL VLYYLKRKIC KKRLKLNVIA ETDVYKWDPE 60 ELPGLSLLKT GDRQWFFFSP RDRRYPNGGR SNRATRHGYW KATGKDRNIS CYNRSVGLKK 120 TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA 180 PFREEDWADD ECPIINNSAD REISVQQVGE LAANYNVKPF GEIPLKQVEE ITANGYVNVN 240 SEVHSTIDDL ERFMKQIADD AVLDLPQFND HVHTLSQVVS EEETQSTVVD LYSSEVKCPQ 300 SITTFDPSGQ QGNAHACFDF TQSATSQMQL YEASEASASD VHQPEPFTPI LREEDFLEMD 360 DLLGPEPTIS NTGNSGGNLQ FDELDGFDMF HDAAMFFNDM GPIEQGTVSH QFMNSMEGNI 420 VNQFDYQIQP APPIQINHQL TQESTQINNQ LWVQNERQDL YTSAESKQGS GPQFNSGVVY 480 DSSNHPPQAN QNQSGNEAAS VTSQFSSALW SFVESIPTTP ASASENALVS RAFERMNSFS 540 RMRIIARSAN VPAGNDSETR GSRKRGFFFI PVLVALCAIF WVLMASLRQW GRCISS

Sequence ? help Back to Top

Protein Sequence Length: 596 aa Download sequence

MVSGDDLASA FCDGHFWQPG FRFHPTDEEL VLYYLKRKIC KKRLKLNVIA ETDVYKWDPE  60
ELPGLSLLKT GDRQWFFFSP RDRRYPNGGR SNRATRHGYW KATGKDRNIS CYNRSVGLKK  120
TLVFYKGRAP TGERTDWVMH EYTLDEEELK RCQNVQEYYA LYKVFKKSGP GPKNGEQYGA  180
PFREEDWADD ECPIINNSAD REISVQQVGE LAANYNVKPF GEIPLKQVEE ITANGYVNVN  240
SEVHSTIDDL ERFMKQIADD AVLDLPQFND HVHTLSQVVS EEETQSTVVD LYSSEVKCPQ  300
SITTFDPSGQ QGNAHACFDF TQSATSQMQL YEASEASASD VHQPEPFTPI LREEDFLEMD  360
DLLGPEPTIS NTGNSGGNLQ FDELDGFDMF HDAAMFFNDM GPIEQGTVSH QFMNSMEGNI  420
VNQFDYQIQP APPIQINHQL TQESTQINNQ LWVQNERQDL YTSAESKQGS GPQFNSGVVY  480
DSSNHPPQAN QNQSGNEAAS VTSQFSSALW SFVESIPTTP ASASENALVS RAFERMNSFS  540
RMRIIARSAN VPAGNDSETR GSRKRGFFFI PVLVALCAIF WVLMASLRQW GRCISS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	45	KRKICKKRLK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34190.1	1e-140	NAC family protein