PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0274591

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

ERF

Protein Properties

Length: 451aa MW: 48674.3 Da PI: 7.4286

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0274591	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.6	2e-20	218	267	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+tae Aa+a+++a+++++g RcHm_v2.0_Chr6g0274591 218 RYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTAEAAARAYDEAALRFRG 267 7******.******7.....337***********************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 451 aa Download sequence
MCLLKVANQR SSGDGGPFQA QNDDVVPVDY EEASGELMSN QLVQGVRLQR RPQSTVSPSM 60 LLGYSRPEAE MSAMVSALTH VVSGQRHVVS GSSGGVASSF GQVYSAASGN SPPLSAFSSN 120 NNNTSSSSGS RAGQKRGREE QTQALLMDQS NRPYGGGYAD FRATQPESST GATTTVYEDD 180 TKSVTTAGST VTATASTAVR SVVAETVSPE ETGERRRRYR GVRQRPWGKW AAEIRDPHKA 240 ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENVRV IPPQQPLQNY AQSISSHSAS 300 THLAPNRPVR PLQPPTQPLQ HQQPLYQSQP FQGSPDLLRD YLDYSHLLQS SIDIHSQQQP 360 QPTNFLEQMY YNSQLASLQS SLLQQPPPSS STVSSALPSS ASSSASFPLL FSDHQQQLSF 420 FEAPENQNPG GSSGFPAPSW SQSGHNHSSS G

Sequence ? help Back to Top

Protein Sequence Length: 451 aa Download sequence

MCLLKVANQR SSGDGGPFQA QNDDVVPVDY EEASGELMSN QLVQGVRLQR RPQSTVSPSM  60
LLGYSRPEAE MSAMVSALTH VVSGQRHVVS GSSGGVASSF GQVYSAASGN SPPLSAFSSN  120
NNNTSSSSGS RAGQKRGREE QTQALLMDQS NRPYGGGYAD FRATQPESST GATTTVYEDD  180
TKSVTTAGST VTATASTAVR SVVAETVSPE ETGERRRRYR GVRQRPWGKW AAEIRDPHKA  240
ARVWLGTFDT AEAAARAYDE AALRFRGNRA KLNFPENVRV IPPQQPLQNY AQSISSHSAS  300
THLAPNRPVR PLQPPTQPLQ HQQPLYQSQP FQGSPDLLRD YLDYSHLLQS SIDIHSQQQP  360
QPTNFLEQMY YNSQLASLQS SLLQQPPPSS STVSSALPSS ASSSASFPLL FSDHQQQLSF  420
FEAPENQNPG GSSGFPAPSW SQSGHNHSSS G

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	ERRRRY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	5e-17	ERF family protein