PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RcHm_v2.0_Chr6g0274751

Organism

Rosa chinensis

Taxonomic ID

74649

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NAC

Protein Properties

Length: 382aa MW: 42845.9 Da PI: 5.1703

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RcHm_v2.0_Chr6g0274751	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151	5.7e-47	7	134	2	129
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 p GfrF+Ptd elv++yLk+kv gk+l++ +vi+evdiyk+ PwdLp k + + ++ +wyfFs+ +kkyatg r nrat++gyWk + RcHm_v2.0_Chr6g0274751 7 PSGFRFSPTDVELVKYYLKRKVMGKRLHV-KVIAEVDIYKYAPWDLPdKsCWRFGDLKWYFFSPIEKKYATGARVNRATEAGYWKMS 92 89*************************.99**********96345666889************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 gkd++v +gelvg ktLvfy+gr ++ge+tdWv+heyrle RcHm_v2.0_Chr6g0274751 93 GKDRSVNY-NGELVGWIKTLVFYTGRPSRGERTDWVLHEYRLE 134 ***9.99****************************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence
MGRASFPSGF RFSPTDVELV KYYLKRKVMG KRLHVKVIAE VDIYKYAPWD LPDKSCWRFG 60 DLKWYFFSPI EKKYATGARV NRATEAGYWK MSGKDRSVNY NGELVGWIKT LVFYTGRPSR 120 GERTDWVLHE YRLEDKGVPQ ESYVLCVLFQ KEGQGPKNGA QYGAPFKEED WTDDEVEICL 180 DTVPHANRPE PDLVLPRGYN SSSLTSTDCP DGMCIGPSSE SCISDVVPPS CNIFHSVPSN 240 SVTTEKQSVS ANADILSMLD CFVEESTFLI NGNDKSKKLD SLIHSGNTST TQKLDILNPR 300 NANATEGRDN IPHSGNANAT DHFNRSDIYR DLADLGNLGR VEDGHNLSSM HGSLYTMDEI 360 FELVDLDKPL NCDTSIYNLP SS

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence

MGRASFPSGF RFSPTDVELV KYYLKRKVMG KRLHVKVIAE VDIYKYAPWD LPDKSCWRFG  60
DLKWYFFSPI EKKYATGARV NRATEAGYWK MSGKDRSVNY NGELVGWIKT LVFYTGRPSR  120
GERTDWVLHE YRLEDKGVPQ ESYVLCVLFQ KEGQGPKNGA QYGAPFKEED WTDDEVEICL  180
DTVPHANRPE PDLVLPRGYN SSSLTSTDCP DGMCIGPSSE SCISDVVPPS CNIFHSVPSN  240
SVTTEKQSVS ANADILSMLD CFVEESTFLI NGNDKSKKLD SLIHSGNTST TQKLDILNPR  300
NANATEGRDN IPHSGNANAT DHFNRSDIYR DLADLGNLGR VEDGHNLSSM HGSLYTMDEI  360
FELVDLDKPL NCDTSIYNLP SS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.3	1e-96	NAC family protein